conkit.io.caspmode2 module¶

Parser module specific to CASP-RR MODE 2 distance predictions

class CaspMode2Parser[source]¶

Bases: conkit.io._parser.DistanceFileParser

Parser class for CASP RR MODE 2 distance prediction file

read(f_handle, f_id='casp2')[source]¶

Read a distance prediction file

Parameters:	f_handle – Open file handle [read permissions] f_id (str, optional) – Unique contact file identifier
Returns:
Return type:	`DistanceFile`

write(f_handle, hierarchy)[source]¶

Write a distance prediction file instance to a file

Parameters:	f_handle – Open file handle [write permissions] hierarchy (`DistanceFile`, `Distogram`) – or `Distance`
Raises:	`RuntimeError` – More than one contact map in the hierarchy