Source code for conkit.misc

# BSD 3-Clause License
#
# Copyright (c) 2016-19, University of Liverpool
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright notice, this
#   list of conditions and the following disclaimer.
#
# * Redistributions in binary form must reproduce the above copyright notice, #   this list of conditions and the following disclaimer in the documentation
#   and/or other materials provided with the distribution.
#
# * Neither the name of the copyright holder nor the names of its
#   contributors may be used to endorse or promote products derived from
#   this software without specific prior written permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
"""Various miscellaneous code required by ConKit"""

__author__ = "Felix Simkovic"
__date__ = "18 May 2018"
__version__ = "2.0"

import numpy as np
import warnings


[docs]def deprecate(version, msg=None): """Decorator to deprecate Python classes and functions Parameters ---------- version : str A string containing the version with which the callable is removed msg : str, optional An additional message that will be displayed alongside the default message Examples -------- Enable :obj:`~DeprecationWarning` messages to be displayed. >>> import warnings >>> warnings.simplefilter('default') Decorate a simple Python function without additional message >>> @deprecate('0.0.0') ... def sum(a, b): ... return a + b >>> sum(1, 2) deprecated.py:34: DeprecationWarning: sum has been deprecated and will be removed in version 0.0.0! warnings.warn(message, DeprecationWarning) 3 Decorate a simple Python function with additional message >>> @deprecate('0.0.1', msg='Use XXX instead!') ... def sum(a, b): ... return a + b >>> sum(2, 2) deprecated.py:34: DeprecationWarning: sum has been deprecated and will be removed in version 0.0.0! - Use XXX instead! warnings.warn(message, DeprecationWarning) 4 Decorate an entire Python class >>> @deprecate('0.0.2') ... class Obj(object): ... pass >>> Obj() deprecated.py:34: DeprecationWarning: Obj has been deprecated and will be removed in version 0.0.2! warnings.warn(message, DeprecationWarning) <__main__.Obj object at 0x7f8ee0f1ead0> Decorate a Python class method >>> class Obj(object): ... def __init__(self, v): ... self.v = v ... @deprecate('0.0.3') ... def mul(self, other): ... return self.v * other.v >>> Obj(2).mul(Obj(3)) deprecated.py:34: DeprecationWarning: mul has been deprecated and will be removed in version 0.0.3! warnings.warn(message, DeprecationWarning) 6 Decorate a Python class staticmethod >>> class Obj(object): ... @staticmethod ... @deprecate('0.0.4') ... def sub(a, b): ... return a - b >>> Obj.sub(2, 1) deprecated.py:34: DeprecationWarning: sub has been deprecated and will be removed in version 0.0.4! warnings.warn(message, DeprecationWarning) 1 Decorate a Python class classmethod >>> class Obj(object): ... CONST = 5 ... @classmethod ... @deprecate('0.0.5') ... def sub(cls, a): ... return a - cls.CONST >>> Obj().sub(5) deprecated.py:34: DeprecationWarning: sub has been deprecated and will be removed in version 0.0.5! warnings.warn(message, DeprecationWarning) 0 """ def deprecate_decorator(callable_): def warn(*args, **kwargs): message = "%s has been deprecated and will be removed in version %s!" % (callable_.__name__, version) if msg: message += " - %s" % msg warnings.warn(message, DeprecationWarning) return callable_(*args, **kwargs) return warn return deprecate_decorator
[docs]def normalize(data, vmin=0, vmax=1): """Apply a Feature scaling algorithm to normalize the data This normalization will bring all values into the range [0, 1]. This function allows range restrictions by values ``vmin`` and ``vmax``. .. math:: {X}'=\\frac{(X-X_{min})(vmax-vmin)}{X_{max}-X_{min}} Parameters ---------- data : list, tuple The data to normalize vmin : int, float, optional The minimum value vmax : int, float, optional The maximum value Returns ------- list The normalized data """ data = np.array(data, dtype=np.float64) if np.unique(data).size == 1: data.fill(vmax) else: data = vmin + (data - data.min()) * (vmax - vmin) / (data.max() - data.min()) return data.tolist()