Source code for conkit.core.struct

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"""Internal classes required by ConKit defining some sort of internal structure"""

from __future__ import division
from __future__ import print_function

__author__ = "Felix Simkovic"
__date__ = "03 Aug 2016"
__version__ = "1.0"

from collections import namedtuple

Residue = namedtuple("Residue", ["res_seq", "res_altseq", "res_name", "res_chain"])


[docs]class Gap(namedtuple("Gap", Residue._fields)): IDENTIFIER = -999999
Gap.__new__.__defaults__ = (Gap.IDENTIFIER, Gap.IDENTIFIER, "X", "")