conkit.plot.contactmapchord module¶

A module to produce a contact map chord diagram

class ContactMapChordFigure(hierarchy, use_conf=False, **kwargs)[source]¶

Bases: conkit.plot.figure.Figure

A Figure object specifically for a ContactMap

This figure will illustrate the contacts linking the residues in the target sequence. This plot is a very common representation of contacts. With this figure, you can illustrate intra-molecular.

Color scheme:

Amino acid	Hex code	Amino acid	Hex code	Amino acid	Hex code	Amino acid	Hex code	Amino acid	Hex code
Ala	`#882D17`	Arg	`#B3446C`	Asn	`#F99379`	Asp	`#875692`	Cys	`#F3C300`
Gln	`#F6A600`	Glu	`#F38400`	Gly	`#BE0032`	His	`#C2B280`	Ile	`#848482`
Leu	`#E68FAC`	Lys	`#008856`	Met	`#0067A5`	Phe	`#A1CAF1`	Pro	`#604E97`
Ser	`#DCD300`	Thr	`#8DB600`	Trp	`#E25822`	Tyr	`#2B3D26`	Val	`#654522`
Unk	`#000000`

hierarchy¶

The default contact map hierarchy

Type:	`ContactMap`

Examples

>>> import conkit
>>> cmap = conkit.io.read('toxd/toxd.mat', 'ccmpred').top_map
>>> conkit.plot.ContactMapChordFigure(cmap)

draw()[source]¶

hierarchy: The default contact map hierarchy