conkit.plot.contactmap module¶
A module to produce a contact map plot
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class
ContactMapFigure
(hierarchy, other=None, reference=None, altloc=False, use_conf=False, lim=None, **kwargs)[source]¶ Bases:
conkit.plot.figure.Figure
A Figure object specifically for a
ContactMap
This figure will illustrate the contacts in a contact map. This plot is a very common representation of contacts. With this figure, you can illustrate either your contact map by itself, compared against a second contact map, and/or matched against contacts extracted from a contact map.
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hierarchy
¶ The default contact map hierarchy
Type: ContactMap
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other
¶ The second contact map hierarchy
Type: ContactMap
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reference
¶ The reference contact map hierarchy
Type: ContactMap
Examples
>>> import conkit >>> cmap = conkit.io.read('toxd/toxd.mat', 'ccmpred').top_map >>> conkit.plot.ContactMapFigure(cmap)
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hierarchy
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lim
¶
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other
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reference
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