conkit.io.stockholm module

Parser module specific to Stockholm sequence files

class StockholmParser[source]

Bases: conkit.io._parser.SequenceFileParser

Parser class for Stockholm sequence files

read(f_handle, f_id='stockholm')[source]

Read a sequence file

Parameters:
  • f_handle – Open file handle [read permissions]
  • f_id (str, optional) – Unique sequence file identifier
Returns:
Return type:

SequenceFile
write(f_handle, hierarchy)[source]

Write a sequence file instance to to file

Parameters: