conkit.io.clustal module

Parser module specific to CLUSTAL sequence files

class ClustalParser[source]

Bases: conkit.io._parser.SequenceFileParser

Parser class for CLUSTAL sequence files

read(f_handle, f_id='fasta')[source]

Read a sequence file

Parameters:
  • f_handle – Open file handle [read permissions]
  • f_id (str, optional) – Unique sequence file identifier
Returns:
Return type:

SequenceFile
Raises:

TypeError – Incorrect file format
write(f_handle, hierarchy)[source]

Write a sequence file instance to to file

Parameters: