conkit.io.casp module¶

Parser module specific to CASP-RR predictions

class CaspParser[source]¶

Bases: conkit.io._parser.ContactFileParser

Parser class for CASP RR contact prediction file

read(f_handle, f_id='casp')[source]¶

Read a contact file into a ContactFile instance

Parameters:	f_handle – Open file handle [read permissions] f_id (str, optional) – Unique contact file identifier
Returns:
Return type:	`ContactFile`

write(f_handle, hierarchy)[source]¶

Write a contact file instance to to file

Parameters:	f_handle – Open file handle [write permissions] hierarchy (`ContactFile`, `ContactMap`) – or `Contact`