conkit.io.bbcontacts module¶

Parser module specific to bbcontacts predictions

class BbcontactsParser[source]¶

Bases: conkit.io._parser.ContactFileParser

Class to parse a Bbcontacts contact file

read(f_handle, f_id='bbcontacts', del_one_two=False)[source]¶

Read a contact file

Parameters:	f_handle – Open file handle [read permissions] f_id (str, optional) – Unique contact file identifier del_one_two (bool) – Remove one- & two-strand sheets
Returns:
Return type:	`ContactFile`

write(f_handle, hierarchy)[source]¶

Write a contact file instance to to file

Parameters:	f_handle – Open file handle [write permissions] hierarchy (`ContactFile`, `ContactMap`) – or `Contact`

Note

Creating a write() method would come with a lot of issues, such as the parallel/antiparallel direction, scoring etc … thus, this function is unvailable.

Raises:	`NotImplementedError` – Write function not available