conkit.command_line.conkit_validate module

This script provides a model validation pipeline. It will take a sequence, a predicted distogram and a PDB model, then compare the distances observed in the model and those predicted. It will then report regions in the model where an outlier was detected, and use map_align to provide a solution for potential register errors.

It uses one external program to perform this task:

map_align for contact map alignment

* This program needs to be installed separately from https://github.com/sokrypton/map_align*

check_file_exists(input_path)

Check if a given path exists

Parameters:input_path (str, None) – Location of the file to be tested Returns:abspath – The absolute path of the file if it exists, None if the input is None Return type:str, None Raises:FileNotFoundError – The file doesn’t exist

create_argument_parser()

Create a parser for the command line arguments used in conkit-validate

main()

The main routine for conkit-validate functionality