conkit.applications.map_align module¶

Command line object for map_align contact map alignment application

class MapAlignCommandline(cmd='map_align', **kwargs)[source]¶

Bases: Bio.Application.AbstractCommandline

Command line object for map_align [#]_ [#]_

Examples

>>> from conkit.applications import MapAlignCommandline
>>> mapalign_cline = MapAlignCommandline(map_a='cmap_1.mapalign', map_b='cmap_2.mapalign')
>>> print(mapalign_cline)
map_align cmap_1.mapalign cmap_2.mapalign

You would typically run the command line with mapalign_cline() or via the subprocess module.