Contact Prediction ToolKit¶

A Python Interface to Contact Predictions

This project is a result of the continuous struggle using residue-residue contact prediction pipelines, visualisation tools and related software. The aim was to reduce this complexity and provide one unified interface as a basic platform. The resulting interface is the Contact Prediction ToolKit, or ConKit.

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Key Features¶

Parsers for Multiple Sequence Alignment and contact prediction files
Analysis functions for Multiple Sequence Alignment and contact prediction data
Visualisation of Multiple Sequence Alignment and contact prediction data
Easy-to-use Python wrappers for the contact prediction related software

For a quick overview of ConKit, watch this video.

Installation & Usage¶

Please refer to ConKit’s documentation.

Contributing¶

There are two ways by which you can contribute to ConKit:

Submit any suggestions to the GitHub Issue Tracker, or
Fork this repository, commit your changes and submit a pull request.

Found a Bug?¶

Please use the GitHub Issue Tracker.