conkit.plot.contactmap module¶

A module to produce a contact map plot

class ContactMapFigure(hierarchy, other=None, reference=None, altloc=False, use_conf=False, **kwargs)[source]¶

Bases: conkit.plot._figure.Figure

A Figure object specifically for a Contact Map

This figure will illustrate the contacts in a contact map. This plot is a very common representation of contacts. With this figure, you can illustrate either your contact map by itself, compared against a second contact map, and/or matched against contacts extracted from a contact map.

Examples

>>> import conkit
>>> cmap = conkit.io.read('toxd/toxd.mat', 'ccmpred').top_map
>>> conkit.plot.ContactMapFigure(cmap)

Attributes

hierarchy	The default contact map hierarchy
other	The second contact map hierarchy
reference	The reference contact map hierarchy

altloc	(bool) Use the res_altloc positions [default: False]
use_conf	(bool) The marker size will correspond to the raw score [default: False]

Methods

redraw()

Re-draw the plot with updated parameters

hierarchy¶

The default contact map hierarchy

other¶

The second contact map hierarchy

redraw()[source]¶

Re-draw the plot with updated parameters

reference¶

The reference contact map hierarchy