conkit.io.stockholm module¶

Parser module specific to Stockholm sequence files

class StockholmParser[source]¶

Bases: conkit.io._parser.SequenceFileParser

Parser class for Stockholm sequence files

Methods

read(f_handle[, f_id])	Read a sequence file
write(f_handle, hierarchy)	Write a sequence file instance to to file

read(f_handle, f_id=’stockholm’)[source]¶

Read a sequence file

Parameters:	f_handle Open file handle [read permissions] f_id : str, optional Unique sequence file identifier
Returns:	SequenceFile

write(f_handle, hierarchy)[source]¶

Write a sequence file instance to to file

Parameters:	f_handle Open file handle [write permissions] hierarchy : SequenceFile or Sequence