Parser module specific to the “Jones” sequence file format
JonesParser[source]¶Bases: conkit.io._parser.SequenceFileParser
Parser class for Jones sequence files
This format is a “new” definition of sequence-only records.
It assumes that there are no comments, headers or any other data in the file.
The only information present are sequences, whereby one sequence is represented in a single line!
Methods
read(f_handle[, f_id]) |
Read a sequence file |
write(f_handle, hierarchy) |
Write a sequence file instance to to file |
read(f_handle, f_id=’jones’)[source]¶Read a sequence file
| Parameters: | f_handle
f_id : str, optional
|
|---|---|
| Returns: |
write(f_handle, hierarchy)[source]¶Write a sequence file instance to to file
| Parameters: | f_handle
hierarchy : |
|---|