conkit.io.ccmpred module¶

Parser module specific to CCMpred predictions

class CCMpredParser[source]¶

Bases: conkit.io._parser.ContactFileParser

Class to parse a CCMpred contact matrix

Methods

read(f_handle[, f_id])	Read a contact file
write(f_handle, hierarchy)	Write a contact file instance to to file

read(f_handle, f_id=’ccmpred’)[source]¶

Read a contact file

Parameters:	f_handle Open file handle [read permissions] f_id : str, optional Unique contact file identifier
Returns:	ContactFile

write(f_handle, hierarchy)[source]¶

Write a contact file instance to to file

Parameters:	f_handle Open file handle [write permissions] hierarchy : ContactFile, ContactMap or Contact
Raises:	RuntimeError More than one contact map in the hierarchy TypeError Python3 requires f_handle to be in ‘wb’ or ‘ab’ mode