conkit.io.casp module¶

Parser module specific to CASP-RR predictions

class CaspParser[source]¶

Bases: conkit.io._parser.ContactFileParser

Parser class for CASP RR contact prediction file

Methods

read(f_handle[, f_id])	Read a contact file into a conkit.core.ContactFile instance
write(f_handle, hierarchy)	Write a contact file instance to to file

read(f_handle, f_id=’casp’)[source]¶

Read a contact file into a conkit.core.ContactFile instance

Parameters:	f_handle Open file handle [read permissions] f_id : str, optional Unique contact file identifier
Returns:	ContactFile

write(f_handle, hierarchy)[source]¶

Write a contact file instance to to file

Parameters:	f_handle Open file handle [write permissions] hierarchy : ContactFile, ContactMap or Contact

ContactTemplate¶

alias of Contact

ModelTemplate¶

alias of Model