- raw_score (Contact attribute), [1], [2]
- read() (A3mIO method)
- (BCLContactParser method)
- (BbcontactsParser method)
- (CCMpredParser method)
- (CaspParser method)
- (ComsatParser method)
- (EPCMapParser method)
- (EVfoldParser method)
- (FastaIO method)
- (FreeContactParser method)
- (GremlinParser method)
- (JonesIO method)
- (MemBrainParser method)
- (PconsParser method)
- (PdbParser method)
- (PlmDCAParser method)
- (PsicovParser method)
- (StockholmIO method)
- (in module conkit.io), [1]
- remark (ContactFile attribute), [1], [2]
- (Sequence attribute), [1], [2]
- (SequenceFile attribute), [1], [2]
- remove() (Entity method)
- remove_neighbors() (ContactMap method), [1], [2]
- repr_sequence (ContactMap attribute), [1], [2]
- repr_sequence_altloc (ContactMap attribute), [1], [2]
- res1 (Contact attribute), [1], [2]
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- res1_altseq (Contact attribute), [1], [2]
- res1_chain (Contact attribute), [1], [2]
- res1_seq (Contact attribute), [1], [2]
- res2 (Contact attribute), [1], [2]
- res2_altseq (Contact attribute), [1], [2]
- res2_chain (Contact attribute), [1], [2]
- res2_seq (Contact attribute), [1], [2]
- rescale() (ContactMap method), [1], [2]
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