Contact Prediction ToolKit¶
A Python Interface to contact predictions
This project is a result of the continuous struggle using residue-residue contact prediction pipelines, visualisation tools and related software. The aim was to reduce this complexity and provide one unified interface as a basic platform. The resulting platform is the Contact Prediction ToolKit, or ConKit in short.
Key Features¶
- Parsers for Multiple Sequence Alignment and contact prediction files
- Easy-to-use wrappers for the most-commonly used software, e.g. HHblits, Jackhmmer, CCMpred, PSICOV, ...
- Many convenience functions for prediction-structure matching, determination of True Positive contacts, calculation of MSA and contact prediction statistics, etc.
Contributing¶
There are two ways by which you can contribute to ConKit:
- Submit any suggestions to the GitHub Issue Tracker, or
- Fork this repository, commit your changes and submit a pull request.
Found a Bug?¶
Please use the GitHub Issue Tracker.