Parser module specific to Pdb files
ATOM
¶alias of conkit.io.pdb.Atom
GenericStructureParser
[source]¶Bases: conkit.io._parser.ContactFileParser
Parent class to parse a PDB file and extract distance restraints as residue-residue contacts
MmCifParser
[source]¶Bases: conkit.io.pdb.GenericStructureParser
Class to parse a mmCIF file and extract distance restraints as residue-residue contacts
read
(f_handle, f_id='mmcif', distance_cutoff=8, atom_type='CB')[source]¶Read a contact file
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write
(f_handle, hierarchy)[source]¶Write a contact file instance to to file
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PdbParser
[source]¶Bases: conkit.io.pdb.GenericStructureParser
Class to parse a PDB file and extract distance restraints as residue-residue contacts
read
(f_handle, f_id='pdb', distance_cutoff=8, atom_type='CB')[source]¶Read a contact file
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Returns: | |
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write
(f_handle, hierarchy)[source]¶Write a contact file instance to to file
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