Contact container used throughout ConKit
Contact
(res1_seq, res2_seq, raw_score, distance_bound=(0, 8))[source]¶Bases: conkit.core.entity.Entity
A contact pair template to store all associated information
Examples
>>> from conkit.core import Contact
>>> contact = Contact(1, 25, 1.0)
>>> print(contact)
Contact(id="(1, 25)" res1="A" res1_seq=1 res2="A" res2_seq=25 raw_score=1.0)
distance_bound
¶The lower and upper distance boundary values of a contact pair in Ångstrom [Default: 0-8Å].
Type: | tuple |
---|
define_match
(**kwargs)¶define_mismatch
(**kwargs)¶define_unknown
(**kwargs)¶distance_bound
0-8Å].
Type: | The lower and upper distance boundary values of a contact pair in Ångstrom [Default |
---|
false_negative
false_positive
is_match
¶is_mismatch
¶is_unknown
¶lower_bound
The lower distance boundary value
raw_score
res1
X]
Type: | The amino acid of residue 1 [default |
---|
res1_altseq
The alternative residue sequence number of residue 1
res1_chain
res1_seq
The residue sequence number of residue 1
res2
X]
Type: | The amino acid of residue 2 [default |
---|
res2_altseq
The alternative residue sequence number of residue 2
res2_chain
res2_seq
The residue sequence number of residue 2
scalar_score
status
An indication of the residue status
status_unknown
true_negative
true_positive
upper_bound
The upper distance boundary value
weight