The peval subcommand of the conkit-plot script is used to plot the precision evaluation plot of the contact prediction file when compared against a second contact prediction or structure.
$> conkit-plot peval -j 0.1 -min 0 -max 2.0 toxd/toxd.pdb pdb toxd/toxd.fasta fasta toxd/toxd.mat ccmpred
Three command line flags above are important to note. The -min flag is the minimum factor for contact selection, i.e. L * min number of contacts. The -max flag is the maximum factor for contact selection, i.e. L * max number of contacts. The -j flag defines the stepwise increase inbetween -min and -max.
