Source code for conkit.core.struct
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"""Internal classes required by ConKit defining some sort of internal structure"""
from __future__ import division
from __future__ import print_function
__author__ = "Felix Simkovic"
__date__ = "03 Aug 2016"
__version__ = "1.0"
class _Struct(object):
"""A basic class representing a struct residue"""
__slots__ = ('res_seq', 'res_altseq', 'res_name', 'res_chain')
def __repr__(self):
string = "{name}(res_seq='{res_seq}' res_altseq='{res_altseq}' res_name='{res_name}' res_chain='{res_chain}')"
return string.format(name=self.__class__.__name__, **{k: getattr(self, k) for k in self.__class__.__slots__})
[docs]class Gap(_Struct):
"""A basic class representing a gap residue"""
IDENTIFIER = -999999
def __init__(self):
self.res_seq = Gap.IDENTIFIER
self.res_altseq = Gap.IDENTIFIER
self.res_name = 'X'
self.res_chain = ''
[docs]class Residue(_Struct):
"""A basic class representing a residue"""
def __init__(self, res_seq, res_altseq, res_name, res_chain):
self.res_seq = res_seq
self.res_altseq = res_altseq
self.res_name = res_name
self.res_chain = res_chain