A module to produce a contact map plot
ContactMapFigure
(hierarchy, other=None, reference=None, altloc=False, use_conf=False, lim=None, **kwargs)[source]¶Bases: conkit.plot.figure.Figure
A Figure object specifically for a ContactMap
This figure will illustrate the contacts in a contact map. This plot is a very common representation of contacts. With this figure, you can illustrate either your contact map by itself, compared against a second contact map, and/or matched against contacts extracted from a contact map.
hierarchy
¶ContactMap
– The default contact map hierarchy
other
¶ContactMap
– The second contact map hierarchy
reference
¶ContactMap
– The reference contact map hierarchy
altloc
¶bool – Use the res_altloc
positions [default: False]
use_conf
¶bool – The marker size will correspond to the raw score [default: False]
Examples
>>> import conkit
>>> cmap = conkit.io.read('toxd/toxd.mat', 'ccmpred').top_map
>>> conkit.plot.ContactMapFigure(cmap)
hierarchy
lim
¶other
redraw
(*args, **kwargs)¶reference