AminoAcidMapping
[source]¶Bases: enum.Enum
Amino acid mapping to encode an alignment
A
= 1¶C
= 2¶D
= 3¶E
= 4¶F
= 5¶G
= 6¶H
= 7¶I
= 8¶K
= 9¶L
= 10¶M
= 11¶N
= 12¶P
= 13¶Q
= 14¶R
= 15¶S
= 16¶T
= 17¶V
= 18¶W
= 19¶X
= 21¶Y
= 20¶AminoAcidOneToThree
[source]¶Bases: enum.Enum
Amino acid mapping to convert one-letter codes to three-letter codes
A
= ‘ALA’¶B
= ‘ASX’¶C
= ‘CYS’¶D
= ‘ASP’¶E
= ‘GLU’¶F
= ‘PHE’¶G
= ‘GLY’¶H
= ‘HIS’¶I
= ‘ILE’¶J
= ‘XLE’¶K
= ‘LYS’¶L
= ‘LEU’¶M
= ‘MET’¶N
= ‘ASN’¶O
= ‘PYL’¶P
= ‘PRO’¶Q
= ‘GLN’¶R
= ‘ARG’¶S
= ‘SER’¶T
= ‘THR’¶U
= ‘SEC’¶V
= ‘VAL’¶W
= ‘TRP’¶X
= ‘XAA’¶Y
= ‘TYR’¶Z
= ‘GLX’¶AminoAcidThreeToOne
[source]¶Bases: enum.Enum
Amino acid mapping to convert three-letter codes to one-letter codes
ALA
= ‘A’¶ARG
= ‘R’¶ASN
= ‘N’¶ASP
= ‘D’¶ASX
= ‘B’¶CME
= ‘C’¶CYS
= ‘C’¶GLN
= ‘Q’¶GLU
= ‘E’¶GLX
= ‘Z’¶GLY
= ‘G’¶HIS
= ‘H’¶ILE
= ‘I’¶LEU
= ‘L’¶LYS
= ‘K’¶MET
= ‘M’¶MSE
= ‘M’¶PHE
= ‘F’¶PRO
= ‘P’¶PYL
= ‘O’¶SEC
= ‘U’¶SER
= ‘S’¶THR
= ‘T’¶TRP
= ‘W’¶TYR
= ‘Y’¶UNK
= ‘X’¶VAL
= ‘V’¶XAA
= ‘X’¶XLE
= ‘J’¶