conkit.misc.distances module¶
Amino acid specific distance calculator
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class
DynamicDistances
[source]¶ Bases:
object
Dynamic distance calculator
The data stored in this class corresponds to Supplementary Table 3 in [1].
Examples
>>> DynamicDistances.cutoff('A', 'Y') 9.121
>>> DynamicDistances.percentile('A', 'Y') 0.443
References
[1] Kamisetty et al. (2013). Assessing the utility of coevolution based residue-residue contact predictions in a sequence and structure rich era. PNAS 110(39), 15674-9.