conkit.io.casp module

Parser module specific to CASP-RR predictions

class CaspParser[source]

Bases: conkit.io._parser.ContactFileParser

Parser class for CASP RR contact prediction file

read(f_handle, f_id='casp')[source]

Read a contact file into a ContactFile instance

Parameters:
  • f_handle – Open file handle [read permissions]
  • f_id (str, optional) – Unique contact file identifier
Returns:

Return type:

ContactFile

write(f_handle, hierarchy)[source]

Write a contact file instance to to file

Parameters:
ContactTemplate

alias of conkit.io.casp.Contact

ModelTemplate

alias of conkit.io.casp.Model