conkit.io.casp module¶
Parser module specific to CASP-RR predictions
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class
CaspParser
[source]¶ Bases:
conkit.io._parser.ContactFileParser
Parser class for CASP RR contact prediction file
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read
(f_handle, f_id='casp')[source]¶ Read a contact file into a
ContactFile
instanceParameters: - f_handle – Open file handle [read permissions]
- f_id (str, optional) – Unique contact file identifier
Returns: Return type:
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write
(f_handle, hierarchy)[source]¶ Write a contact file instance to to file
Parameters: - f_handle – Open file handle [write permissions]
- hierarchy (
ContactFile
,ContactMap
) – orContact
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ContactTemplate
¶ alias of
conkit.io.casp.Contact
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ModelTemplate
¶ alias of
conkit.io.casp.Model