conkit.io.a3m module¶
Parser module specific to HH-suite A3M sequence files
Credits¶
Stefan Seemayer and his A3MIO project [https://github.com/sseemayer/BioPython-A3MIO]
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class
A3mParser
[source]¶ Bases:
conkit.io._parser.SequenceFileParser
Parser class for A3M sequence files
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read
(f_handle, f_id='a3m', remove_inserts=True)[source]¶ Read a sequence file
Parameters: Returns: Return type:
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write
(f_handle, hierarchy)[source]¶ Write a sequence file instance to to file
Parameters: - f_handle – Open file handle [write permissions]
- hierarchy (
SequenceFile
,Sequence
) –
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