conkit.core.mappings module¶
Mappings required for the core functionality
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class
AminoAcidMapping
[source]¶ Bases:
enum.Enum
Amino acid mapping to encode an alignment
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A
= 1¶
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C
= 2¶
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D
= 3¶
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E
= 4¶
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F
= 5¶
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G
= 6¶
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H
= 7¶
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I
= 8¶
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K
= 9¶
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L
= 10¶
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M
= 11¶
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N
= 12¶
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P
= 13¶
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Q
= 14¶
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R
= 15¶
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S
= 16¶
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T
= 17¶
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V
= 18¶
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W
= 19¶
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X
= 21¶
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Y
= 20¶
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class
AminoAcidOneToThree
[source]¶ Bases:
enum.Enum
Amino acid mapping to convert one-letter codes to three-letter codes
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A
= 'ALA'¶
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B
= 'ASX'¶
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C
= 'CYS'¶
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D
= 'ASP'¶
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E
= 'GLU'¶
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F
= 'PHE'¶
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G
= 'GLY'¶
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H
= 'HIS'¶
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I
= 'ILE'¶
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J
= 'XLE'¶
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K
= 'LYS'¶
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L
= 'LEU'¶
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M
= 'MET'¶
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N
= 'ASN'¶
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O
= 'PYL'¶
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P
= 'PRO'¶
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Q
= 'GLN'¶
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R
= 'ARG'¶
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S
= 'SER'¶
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T
= 'THR'¶
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U
= 'SEC'¶
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V
= 'VAL'¶
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W
= 'TRP'¶
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X
= 'XAA'¶
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Y
= 'TYR'¶
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Z
= 'GLX'¶
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class
AminoAcidThreeToOne
[source]¶ Bases:
enum.Enum
Amino acid mapping to convert three-letter codes to one-letter codes
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ALA
= 'A'¶
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ARG
= 'R'¶
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ASN
= 'N'¶
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ASP
= 'D'¶
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ASX
= 'B'¶
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CME
= 'C'¶
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CYS
= 'C'¶
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GLN
= 'Q'¶
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GLU
= 'E'¶
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GLX
= 'Z'¶
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GLY
= 'G'¶
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HIS
= 'H'¶
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ILE
= 'I'¶
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LEU
= 'L'¶
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LYS
= 'K'¶
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MET
= 'M'¶
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MSE
= 'M'¶
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PHE
= 'F'¶
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PRO
= 'P'¶
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PYL
= 'O'¶
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SEC
= 'U'¶
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SER
= 'S'¶
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THR
= 'T'¶
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TRP
= 'W'¶
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TYR
= 'Y'¶
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UNK
= 'X'¶
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VAL
= 'V'¶
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XAA
= 'X'¶
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XLE
= 'J'¶
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