conkit.core.contact module¶
Contact container used throughout ConKit
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class
Contact
(res1_seq, res2_seq, raw_score, distance_bound=(0, 8))[source]¶ Bases:
conkit.core.entity.Entity
A contact pair template to store all associated information
Examples
>>> from conkit.core import Contact >>> contact = Contact(1, 25, 1.0) >>> print(contact) Contact(id="(1, 25)" res1="A" res1_seq=1 res2="A" res2_seq=25 raw_score=1.0)
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distance_bound
¶ The lower and upper distance boundary values of a contact pair in Ångstrom [Default: 0-8Å].
Type: tuple
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distance_bound
0-8Å].
Type: The lower and upper distance boundary values of a contact pair in Ångstrom [Default
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false_negative
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false_positive
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lower_bound
The lower distance boundary value
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raw_score
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res1
X]
Type: The amino acid of residue 1 [default
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res1_altseq
The alternative residue sequence number of residue 1
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res1_chain
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res1_seq
The residue sequence number of residue 1
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res2
X]
Type: The amino acid of residue 2 [default
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res2_altseq
The alternative residue sequence number of residue 2
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res2_chain
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res2_seq
The residue sequence number of residue 2
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scalar_score
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status
An indication of the residue status
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status_unknown
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true_negative
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true_positive
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upper_bound
The upper distance boundary value
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weight
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