conkit.applications.map_align module¶
Command line object for map_align contact map alignment application
-
class
MapAlignCommandline
(cmd='map_align', **kwargs)[source]¶ Bases:
Bio.Application.AbstractCommandline
Command line object for map_align [#]_ [#]_
https://github.com/sokrypton/map_align
Examples
>>> from conkit.applications import MapAlignCommandline >>> mapalign_cline = MapAlignCommandline(map_a='cmap_1.mapalign', map_b='cmap_2.mapalign') >>> print(mapalign_cline) map_align cmap_1.mapalign cmap_2.mapalign
You would typically run the command line with
mapalign_cline()
or via thesubprocess
module.